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New Procedure for Production of CCD Bias and
Dark Reference Files
The procedure for the production of STIS CCD bias reference files has
recently been changed. This change was prompted by the observation that
hot columns in CCD data are often not well eliminated in the pipeline
reduction. Recently, the hot column residuals have been becoming more
apparent due to the increasing number of charge traps. Especially short
exposures have been suffering from residual hot columns.
Hot columns in STIS CCD bias frames are due to charge traps induced by hot
pixels during read out. As the number of hot pixels changes with time, so
does the number of hot columns. To correct for hot columns in the STIS
pipeline reduction, we have been using the following approach in the past. We
replaced the hot columns present in STIS CCD superbiases by the values in a
median-filtered version of the superbiases, and had the weekly darks take
care of hot pixel and hot column subtraction. However, the darks do not show
the hot columns at a S/N as high as those of the superbiases, and the hot
columns are different for the GAIN=1 vs. the GAIN=4 superbiases. It was
therefore deemed better in principle to include the correction for hot
columns in the bias file subtraction step. However, not enough biases have
been taken to make superbiases with adequate S/N on a weekly basis.
We devised the following solution. In our new bias reference file
production procedure, weekly superbiases are created from which the columns
hotter than 5*sigma are extracted and added into a "baseline", high S/N
superbias from which all hot columns were removed (more detailed information
on the weekly bias construction is given at the bottom of this page). The
resulting "weekly superbiases" are then subsequently used to create weekly
superdarks as before. We have tested this new procedure on a suite of images
and spectra taken using different instrument/detector combinations, and found
the results to be a major improvement in that the great majority of the hot
columns do indeed disappear. The residuals at the locations of hot columns
after bias and dark correction are typically consistent with Poisson
noise. While this constitutes a major cosmetic improvement to STIS CCD
images, it should be noted that for many analysis purposes it is
probably not worth reprocessing data merely for this improvement.
As this report is issued (first week of August, 1999), all weekly bias and
dark reference files for the period August 1998 - May 1999 created using the
new procedure have been delivered to the operational STIS pipeline and the
HST archive. Creation of the bias and dark reference files for the periods
March 1997 - August 1998 and June - July 1999 is in process.
- Here are the details on how the weekly bias reference files are
constructed:
- The "weekbias" procedure works as follows. After bias
overscan subtraction for every individual bias
frame, the bias frames in a subset were combined
using calstis2, which did a three-step iterative
cosmic-ray rejection with rejection thresholds of 5,
4, and 3 sigma, respectively. After cosmic ray
rejection, the combined bias was divided by the
number of frames combined (calstis2 adds images
instead of averaging them) so that the image
represents a single zero-second exposure. Subsequently,
hot columns were identified as follows. A
median-filtered version of the averaged bias was
created (kernel = 15 x 2 pixels) and subtracted from
the averaged bias, leaving a "residual" image
containing hot pixels and columns. The lower 20% of
the rows in this "residual" image were averaged
together into a 1-D image from which the columns
hotter than 5 sigma above the effective RMS noise on
the averaged bias were identified. Finally, the
pixel values in those identified columns of the
"residual" image were added into a high-S/N "baseline"
superbias image, from which the hot columns had been
eliminated using cl script "basebias".
- A side effect of this procedure is that the noise of
the weekly bias frame is slightly higher in the columns
with hot-pixel trails than it is in the other columns of
the image.
Finally, on a related note: We have changed the bias monitoring program for
STIS in Cycle 8 in that we are now taking ~100 unbinned biases per week in
CCDGAIN=1 (plus ~20 in CCDGAIN=4 and 14 in often-used binned modes in
CCDGAIN=1) to enable one to create "straightforward" weekly unbinned
CCDGAIN=1 bias reference files (thus eliminating the need to update the hot
columns and thus the need to run the "weekbias" script).
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